Detailed view for PVX_123407

Basic information

TDR Targets ID: 830809
Plasmodium vivax, ER membrane protein complex subunit 6, putative
Source Database / ID:  PlasmoDB 

pI: 10.0505 | Length (AA): 125 | MW (Da): 14215 | Paralog Number: 1

Signal peptide: N | GPI Anchor: N | Predicted trans-membrane segments: 3

Druggability Group : DG1

Targets have been classified into druggability groups (DG) according to their druggability score in network driven prioritizations. DGs range from 1 to 5; the higher the group number, the higher the chance of the target to be druggable

Pfam domains

PF07019   Rab5-interacting protein (Rab5ip)

Gene Ontology

Mouse over links to read term descriptions.
GO:0072546   GO:ER membrane protein complex  

GO:0016021   integral to membrane  
GO:0005783   endoplasmic reticulum  

Metabolic Pathways

This gene is not mapped to any metabolic pathway in KEGG.

Structural information

Modbase 3D models:

There is 1 model calculated for this protein. More info on this model, including the model itself is available at: Modbase

Target Beg Target End Template Template Beg Template End Identity Evalue Model Score MPQS zDope
3 106 3qvp (A) 485 581 31.00 0.92 0.08 0.8352 1.48

Help me make sense of these data.

Target Beg: first modeled residue
Target End: last modeled residue
Template: template structure used for modelling (PDB accession and chain)
Template Beg: first template residue in target-template alignment
Template End: last template residue in target-template alignment
Identity: sequence identity
Evalue: E value for target-template hit
Model Score: GA341 score (>0.7 for reliable model)
MPQS: ModPipe Quality Score (>1.1 for reliable model)
zDope: zDope Score (negative for reliable model)

A more detailed description of these scores is available at the Modbase Model Evaluation Help Pages, and in the papers referenced therein.

PDB Structures:

No structure availble in the PDB for this protein

Expression

Upregulation Percent Ranking Stage Dataset
Upper 80-100% percentile intraerythrocytic - 6 hs, intraerythrocytic - 12 hs, intraerythrocytic - 18 hs. Zhu L
Upregulation Percent Ranking Stage Dataset
Upper 60-80% percentile intraerythrocytic - 24 hs. Zhu L
Upregulation Percent Ranking Stage Dataset
Mid 40-60% percentile intraerythrocytic - 30 hs, intraerythrocytic - 36 hs, intraerythrocytic - 40 hs, intraerythrocytic - 48 hs. Zhu L
Show/Hide expression data references
  • Zhu L New insights into the Plasmodium vivax transcriptome using RNA-Seq.

Orthologs

Ortholog group members (OG5_150533)

Species Accession Gene Product
Babesia bovis BBOV_IV001440   Rab geranylgeranyltransferase, beta subunit
Cryptosporidium parvum cgd3_2350   possible RAB geranylgeranyl transferase, b subunit1, pernyltransferase
Plasmodium berghei PBANKA_1430100   geranylgeranyl transferase type2 beta subunit, putative
Plasmodium falciparum PF3D7_1214300   geranylgeranyl transferase type2 beta subunit, putative
Plasmodium knowlesi PKNH_1433800   geranylgeranyl transferase type2 beta subunit, putative
Plasmodium knowlesi PKNH_1433900   ER membrane protein complex subunit 6, putative
Plasmodium vivax PVX_123407   ER membrane protein complex subunit 6, putative
Plasmodium vivax PVX_123405   geranylgeranyl transferase type2 beta subunit, putative
Plasmodium yoelii PY02024   type ii proteins geranylgeranyltransferase beta subunit
Theileria parva TP01_0171   geranylgeranyl transferase type 2 beta subunit, putative

Essentiality

No essentiality data collected for this gene and/or its orthologs.

Phenotypes and Validation (curated)

We have no manually annotated phenotypes for this target. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please contact us.

Annotated validation

No validation data for this target

Associated compounds / Druggability

Known modulators for this target

No chemical compounds associated to this gene

Predicted associations

By orthology with druggable targets
Non orthologous druggable targets
By sequence similarity to non orthologous druggable targets
No additional associated druggable targets
Obtained from network model
No druggable targets predicted through repurposing network model

Assayability

Assay information

No assay information for this target.

Reagent availability

No reagent availability information for this target.

Bibliographic References

No literature references available for this target.

If you have references for this gene, please enter them in a user comment (below) or Contact us.

User comments

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Gene identifier PVX_123407 (Plasmodium vivax), ER membrane protein complex subunit 6, putative
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